Question: error running RSEM in Galaxy
2
gravatar for kml
10 months ago by
kml20
kml20 wrote:

Hi all, I'm trying to run RSEM using Galaxy, but keep getting error messages: "cannot find 'bowtie_options' while searching for 'input.bowtie_options.fullparams'". I'm inputting BAM files from output of HISAT2 alignment. could that be the problem? I run before that "RSEM prepare reference", with a genome and a gtf file. does anyone know what is the problem? thank you in advance.

rsem rna-seq quantification • 325 views
ADD COMMENTlink written 10 months ago by kml20

Please report this on the galaxy site and also mention the Galaxy server you happen to be using.

ADD REPLYlink written 10 months ago by Devon Ryan88k

I'm using the Galaxy Melbourne server. Thanks

ADD REPLYlink written 10 months ago by kml20
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