No fusion gene information is avaiable in COSMIC cell lines browser
1
0
Entering edit mode
3.4 years ago
Zhixue ▴ 10

COSMIC Cell Lines Project v85 was released on 08-MAY-2018. A great deal of specific cell lines' variant information is presented in the browser.

However, my friend was interested in the fusion gene information of different cell lines, but he found no fusion gene information in some cell lines.(such as THP-1, which may has fusion gene). enter image description here


Does anyone get fusion gene information in other cell lines, or care about fusion in cell lines?

fusion gene cell line COSMIC • 671 views
ADD COMMENT
0
Entering edit mode
3.4 years ago
Denise CS ★ 5.2k

I've tried other cell lines e.g. COLO-829, A549 and a couple more, and no data under fusions or breakpoints. I can't seem to find the previous version of the project to check if that was ok there. I'd suggest you to contact COSMIC and let them know about this.

ADD COMMENT
0
Entering edit mode

Thank you a lot! Perhaps it was a common problem. I may try to contact them after finishing my current work.

ADD REPLY

Login before adding your answer.

Traffic: 1372 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6