Question: No fusion gene information is avaiable in COSMIC cell lines browser
0
gravatar for Zhixue
14 months ago by
Zhixue10
China/Shanghai/TJ
Zhixue10 wrote:

COSMIC Cell Lines Project v85 was released on 08-MAY-2018. A great deal of specific cell lines' variant information is presented in the browser.

However, my friend was interested in the fusion gene information of different cell lines, but he found no fusion gene information in some cell lines.(such as THP-1, which may has fusion gene). enter image description here


Does anyone get fusion gene information in other cell lines, or care about fusion in cell lines?

cosmic fusion gene cell line • 290 views
ADD COMMENTlink modified 14 months ago by Denise - Open Targets5.0k • written 14 months ago by Zhixue10
0
gravatar for Denise - Open Targets
14 months ago by
UK, Hinxton, EMBL-EBI
Denise - Open Targets5.0k wrote:

I've tried other cell lines e.g. COLO-829, A549 and a couple more, and no data under fusions or breakpoints. I can't seem to find the previous version of the project to check if that was ok there. I'd suggest you to contact COSMIC and let them know about this.

ADD COMMENTlink written 14 months ago by Denise - Open Targets5.0k

Thank you a lot! Perhaps it was a common problem. I may try to contact them after finishing my current work.

ADD REPLYlink written 14 months ago by Zhixue10
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