Question: No fusion gene information is avaiable in COSMIC cell lines browser
0
gravatar for Zhixue
2.1 years ago by
Zhixue10
China/Shanghai
Zhixue10 wrote:

COSMIC Cell Lines Project v85 was released on 08-MAY-2018. A great deal of specific cell lines' variant information is presented in the browser.

However, my friend was interested in the fusion gene information of different cell lines, but he found no fusion gene information in some cell lines.(such as THP-1, which may has fusion gene). enter image description here


Does anyone get fusion gene information in other cell lines, or care about fusion in cell lines?

cosmic fusion gene cell line • 455 views
ADD COMMENTlink modified 2.1 years ago by Denise CS5.1k • written 2.1 years ago by Zhixue10
0
gravatar for Denise CS
2.1 years ago by
Denise CS5.1k
UK, Hinxton, EMBL-EBI
Denise CS5.1k wrote:

I've tried other cell lines e.g. COLO-829, A549 and a couple more, and no data under fusions or breakpoints. I can't seem to find the previous version of the project to check if that was ok there. I'd suggest you to contact COSMIC and let them know about this.

ADD COMMENTlink written 2.1 years ago by Denise CS5.1k

Thank you a lot! Perhaps it was a common problem. I may try to contact them after finishing my current work.

ADD REPLYlink written 2.1 years ago by Zhixue10
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