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• How to acquire the mature miRNA data from TCGA
  Hello! I have some questions about the data from TCGA(experimental.strategy = "miRNA-Seq"), ther...
• Is the expression value of miRNA precursore is equivalent to it's corresponding mature miRNA form ?
  I have the miRNA and it's regulatroy target information from TargetScan. all the miRNA IDs (miRBa...
• Illumina Smallrna-Seq Experiment Using Smrna-Seq V1.5 Library Prep - Strange Results When Aligning Reads
  Hi, my first question here in BioStar - so hello everyone! :-) We have performed a smRNA-Seq ex...
• precursor miRNAs from TCGA
  Hello all, I am interested in examing precursor miRNA data from TCGA ([GDC Data Portal][1]). ...
• Which kind of microRNAs expression are measured in TCGA?
  Hi all, I have download the mRNA and microRNA NGS data from TCGA for BRCA. for downloading the m...
• Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
  I have miRNA-seq data (Single end) which I map to the whole UCSC hg19 genome. Now given the SAM ...
• What is the purpose of having reference genome of other species during miRDeep2?
  Hi all, I am doing miRNA Seq analysis and I am new to it. I have indexed my genome using bowtie ...
• Aligning miRNA reads to miRbase
  Hello., Recently I have got some miRNA reads from the small RNA seq data. I have filtered them f...
• Mirna Prediction from mirbase database
  Hai Stars, I want to identify known and conserved miRNAs from my data. For that i trimmed my read...
• Recommendations for miRNA-Seq quantification with Salmon
  Hi, A bit of background: I have started exploring Salmon as a RNA quantification tool for miRNA-...
• How miRNA sequencing works by Illumina GA ?
  Hi all, I'm using TCGA data set to analysis the expression of miRNA in cancers. They used Illumi...
• miRNA binding detection from RNA-seq reads
  Hello, I have a question regarding miRNA binding to mRNA. If a mRNA binds with miRNA, it will fo...
• Reference sequence for miRna expression analysis
  I was wondering that which one is preferable reference for miRNA expression analysis: mature or p...
• pre-miRNA annotation and quantification
  Hi all, I have a question about pre-miRNA, because I need to quantify pre-miRNA expression level....
• Novel miRNA identification
  Hi! What are some good open-licensed tools for novel miRNA identification from miRNA-Seq files? ...
• counting after aligning miRNA reads to miRBase mature miRNA instead of reference genome
  I have human miRNA-seq data. In the past I have aligned these data using Bowtie2 to the reference...
• Which tool or method can i use to find possible pairing partner of 5p or 3p arm of mature microRNA
  Hello everyone, We have 2 arms in mature miRNA 5p and 3p. If I take one arm for example 5p and i...
• Normalizing data from GEO dataset
  Hi eveyone. I want to use a miRNA seq dataset, from GEO (GSE28884) as a validation dataset, to be...