database for searching introns or exons which contain known binding site
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6.0 years ago
qwesxadzc9 • 0

Dear all, is there any database can search for genes which contain known exonic or intronic splicing enhancer? For instance, I want to get some sequence which contains fox 1 protein binding site UGCAUG, which database should I use? Thank you in advance.

gene sequence • 1.1k views
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JASPAR is the way to go. It gives you the list of binding sites with chromosomal locations in fasta format. Couldn't find FOX1 but FOXA1 is there.

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@Chirag Parsania thank you so much. It did help

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