Question: How to assign PAM50 subtypes to RNA seq data?
1
gravatar for bionerd
22 months ago by
bionerd10
bionerd10 wrote:

Hi, I have RNA-seq data on mouse mammary tumors and I want to see which PAM50 subtype they cluster with. However, I am not really sure how I can do this. Would I use FPKM and just cluster with the 50-gene signature?

thanks

rna-seq • 1.1k views
ADD COMMENTlink modified 22 months ago by james.hawley10 • written 22 months ago by bionerd10
0
gravatar for james.hawley
22 months ago by
james.hawley10
james.hawley10 wrote:

Take a look at the molecular.subtyping in the genefu Bioconductor package

ADD COMMENTlink written 22 months ago by james.hawley10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1202 users visited in the last hour