Question: how to get hg19.fa file into galaxy
0
gravatar for trevinofaith
17 months ago by
trevinofaith0 wrote:

Disclaimer* I am completely new to everything that I have been working on the last couple of days so I need detailed instructions please.

I would like someone to explain to me step by step how to use hg19 as a reference genome in galaxy. I figured out how to download and convert the hg19.2bit file from ucsc, but I am stuck now. I can see the hg19.fa file in virtualbox terminal, but I have no idea what to do next as to extracting the file onto my computer or doing something completely different to get the file into galaxy.

I would appreciate any help! I have been researching extensively online, but I have ultimately decided to post here since I have no other options.

genome • 523 views
ADD COMMENTlink modified 17 months ago by Kevin Blighe51k • written 17 months ago by trevinofaith0
1
gravatar for Kevin Blighe
17 months ago by
Kevin Blighe51k
Kevin Blighe51k wrote:

Dear trevinofaith,

The answer is here: https://biostar.usegalaxy.org/p/23266/#23285

Kevin

ADD COMMENTlink written 17 months ago by Kevin Blighe51k

Thank you so much!!!

ADD REPLYlink written 17 months ago by trevinofaith0
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