I have downloaded total CNV files for a cancer from GDC portal.
I also have the clinical data for all patients, however I cannot map the names of file to submitter IDs.
The file name is some thing like "AMAZE_p_TCGASNP_b86_87_88_N_GenomeWideSNP_6_A01_735406.hg18.seg.txt", while the submitter ID is something like "TCGA-DJ-A2QA".
Can any body guide me how to mach these two names?
Thank you in advance