Question: annotatePeaks.pl without annotation in genes name
0
gravatar for xiaoxiazhong053
10 weeks ago by
xiaoxiazhong0530 wrote:

Hi, guys, i am using homer to do analysis of chip-seq data, however, and when I used annotate.pl to do the annotation of my peak calling.txt, I found that there is no any annotation in gene name or some other column which are important for me, so would you like to help me to figure this out? I really tried a lot to get it, but it still does not work.

chip-seq • 161 views
ADD COMMENTlink modified 8 days ago by prakash240 • written 10 weeks ago by xiaoxiazhong0530

Can you post the command that you have used to annotate the peaks?

ADD REPLYlink written 10 weeks ago by Sej Modha3.3k

Please post a few lines of your input file and the command line.

ADD REPLYlink written 10 weeks ago by ATpoint6.5k

Please share the command you have used.

ADD REPLYlink modified 8 days ago • written 8 days ago by arup470
0
gravatar for prakash
8 days ago by
prakash240
prakash240 wrote:

In Homer, there is annotatePeaks.pl which annotates the peak to nearest gene

ADD COMMENTlink written 8 days ago by prakash240
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 659 users visited in the last hour