Question: annotatePeaks.pl without annotation in genes name
0
gravatar for xiaoxiazhong053
7 months ago by
xiaoxiazhong0530 wrote:

Hi, guys, i am using homer to do analysis of chip-seq data, however, and when I used annotate.pl to do the annotation of my peak calling.txt, I found that there is no any annotation in gene name or some other column which are important for me, so would you like to help me to figure this out? I really tried a lot to get it, but it still does not work.

chip-seq • 302 views
ADD COMMENTlink modified 5 months ago by prakash540 • written 7 months ago by xiaoxiazhong0530

Can you post the command that you have used to annotate the peaks?

ADD REPLYlink written 7 months ago by Sej Modha4.0k

Please post a few lines of your input file and the command line.

ADD REPLYlink written 7 months ago by ATpoint12k

Please share the command you have used.

ADD REPLYlink modified 5 months ago • written 5 months ago by arup720
0
gravatar for prakash
5 months ago by
prakash540
prakash540 wrote:

In Homer, there is annotatePeaks.pl which annotates the peak to nearest gene

ADD COMMENTlink written 5 months ago by prakash540
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