Is it possible to create/stage directories via CWL? Say I have a tool which requires an output directory exists before it can run, but the directories should be automatically inferred from the samples being processed. What is the best way to go about this in CWL?
- Something built into CWL such as
InitialWorkDirRequirement? I tried this, but couldn't quite get it to create the directory, I was just told it does not exist.
mkdiras a separate step in the workflow to create the directories?
If it is possible to do within CWL (1), then does someone have a good example they can point me to? Thanks!