Question: Region of Interest Information in TCGA Histopathological Image
1
gravatar for amandal
14 months ago by
amandal20
amandal20 wrote:

I have downloaded histopathological image data from TCGA. I want to extract features from these images. The dimension of these images are huge and in .SVS format. I am not able to open these images in linux system. How do I preprocess these images, so that I can extract features from these images? There is no information of region of interest. From where I can get these information?

ADD COMMENTlink modified 11 weeks ago by Shicheng Guo7.7k • written 14 months ago by amandal20
0
gravatar for Shicheng Guo
11 weeks ago by
Shicheng Guo7.7k
Shicheng Guo7.7k wrote:

Try this: Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

https://github.com/ysbecca/py-wsi

ADD COMMENTlink written 11 weeks ago by Shicheng Guo7.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1054 users visited in the last hour