I would like to use Popgenome R package to calculate diversity stats. I have a SNP data in the HapMap format. I used following R code to upload hap map file, but getting an error. The GFF file is in the same folder.
GENOME.class<-readHapMap("popgenome/test_631.hmp",populations=FALSE,outgroup=FALSE,gffpath="test_631.gff") Error in readHapMap("popgenome/test_631.hmp", populations = FALSE, outgroup = FALSE, : unused argument (gffpath = "test_631.gff")
Do I need to use to tabix index file for hapmap and gff file?