retrival from arb format
0
0
Entering edit mode
5.9 years ago
nittaym • 0

Hi! I'm working on nifH (nitrogenase) sequences. I've looked a lot for the best DB for nifH and came up with a DB that seems comprehensive (https://www.jzehrlab.com/nifh ). Problem is, it's in arb format! I tried to export the DB to other formats, the problem is that I can only retrieve the sequences with no species info, only an ID which doesn't correspond to any known GeneID. Someone has experience with this old-school program and could maybe help me with how to retrieve the info?

next-gen arb • 986 views
ADD COMMENT
0
Entering edit mode

Hii.. I am also working on the same kind of data and wish to do taxonomy assignment to my OTU's.. have you find out any way to use this nifH arb database.. or any other way to do taxonomy assignment to nifH amplicon data?

ADD REPLY

Login before adding your answer.

Traffic: 1604 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6