SubMap in GenePattern
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3.5 years ago
sugus ▴ 80

Hi there,

Is anyone use GenePattern and familiar with SubMap which used to compare expression data across two data.

I follow the instruction and made a label stating with 1 in 3rd line, and if there is any 0, the GenePattern will automatic add 1 to labels. However, I always get error to read cls file:

Error in if (min(as.numeric(cls)) == 0) { :

missing value where TRUE/FALSE needed

Execution halted


The following is my cls file:

47 4 1
# CTLA4-noR CTLA4-R PD1-noR PD1-R
1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 4 4


I don't know why there cannot derive True or False.... could anyone give me some help.

Thanks.

Thank you so much!

SubMap GenePattern cls • 1.5k views