How to know the mm9 genome size?
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5.9 years ago
mikysyc2016 ▴ 120

When I use MACS2 to do peakcalling, i need to know genome size(gsize), and I use mm9. How I can know that? Thanks!

ChIP-Seq • 2.4k views
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Would FetchChromSizes be helpful?

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5.9 years ago

this link may help

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5.9 years ago
igor 13k

For MACS, genome size is already precompiled for common species. No need to do extra work. You can use mm for mouse.

This is explained in more depth in the documentation.

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macs2 -g mm is what you need.

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