How to get stoichiometric factors for a rhea reaction?
0
1
Entering edit mode
3.4 years ago
cleb ▴ 60

How can I extend the below query to also retrieve the stoichiometric factors of all reagents for the given rhea reaction? I see the scheme (slide 12) but I am not quite sure how to access the factors. I currently have:

PREFIX rh:<http://rdf.rhea-db.org/>

SELECT ?reaction ?reactionEquation ?rea_side ?partic ?compi ?chebi_id
WHERE {
      ?reaction rdfs:subClassOf rh:Reaction .
      ?reaction rh:equation ?reactionEquation .
      ?reaction rh:side ?rea_side .

      ?rea_side rh:contains ?partic .
      ?partic rh:compound ?compi .
      ?compi rh:name ?name .
      ?compi rh:chebi ?chebi_id .

  FILTER (?reaction=rh:11932)
}

In addition, is there a way to also retrieve the charge information of the compound?

sparql rhea semantic-web • 642 views
ADD COMMENT

Login before adding your answer.

Traffic: 2577 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6