Question: Generate the sequence dictionary
0
gravatar for jahanzaib119311
2.3 years ago by
jahanzaib1193110 wrote:

I am trying to generate sequence directory by running the following command in picard tools.

java -jar picard.jar CreateSequenceDictionary REFERENCE=new_hg38.fa OUTPUT=reference.dict

But it returns with this error.

Error: Unable to access jarfile picard.jar

Actually I am new to this any help would be appreciated,

ADD COMMENTlink modified 2.3 years ago by lakhujanivijay5.2k • written 2.3 years ago by jahanzaib1193110

Hi jahanzaib119311

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.
code_formatting

Thank you!

ADD REPLYlink modified 2.3 years ago • written 2.3 years ago by lakhujanivijay5.2k
0
gravatar for d-cameron
2.3 years ago by
d-cameron2.2k
Australia
d-cameron2.2k wrote:

This can be solved by qualifying the path to your picard.jar file. For example, if you have downloaded picard.jar to the bin subdirectory of your home directory, you would change your command line to. java -jar $HOME/bin/picard.jar

ADD COMMENTlink written 2.3 years ago by d-cameron2.2k
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