Hi all the community, I actually need your help because it is the first time I have to assemble a genome.
I actually have in my possession 2 fasta file: reads1.fq and reads2.fq Those file are comming from an illumina Hiseq 3000 150bp and the genome size of my specie is around 1.5 GB.
I would like to use the programm ALLPATH-LG to do so. I read the manual before posting my question here but I still do not know what to really do. Sould I first prepare my data or is there only one commande to execute with my two fasta file and the program runs alone?
If someone could explain me more the detail the process or if someone had already used this program if he can explain me the steps of the process it would be very kind of you.