GATK4 BaseRecalibrator and Target region (whole exome data)
0
1
Entering edit mode
3.5 years ago
oghzzang ▴ 40

Dear Biostar users.

Hello I had pre-processing using GATK 4.0.2.1 version.

My NGS data was made of exome captured (Whole exome data).

I have a question.

When I do baserecalibrator, shoud I use target intervals that is exome region ?

I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.

Thanks.

GATK4 BQSR • 1.5k views
ADD COMMENT

Login before adding your answer.

Traffic: 2254 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6