Question: GATK4 BaseRecalibrator and Target region (whole exome data)
1
gravatar for oghzzang
9 months ago by
oghzzang30
oghzzang30 wrote:

Dear Biostar users.

Hello I had pre-processing using GATK 4.0.2.1 version.

My NGS data was made of exome captured (Whole exome data).

I have a question.

When I do baserecalibrator, shoud I use target intervals that is exome region ?

I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.

Thanks.

bqsr gatk4 • 575 views
ADD COMMENTlink written 9 months ago by oghzzang30
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