Question: GATK4 BaseRecalibrator and Target region (whole exome data)
1
gravatar for oghzzang
16 months ago by
oghzzang40
oghzzang40 wrote:

Dear Biostar users.

Hello I had pre-processing using GATK 4.0.2.1 version.

My NGS data was made of exome captured (Whole exome data).

I have a question.

When I do baserecalibrator, shoud I use target intervals that is exome region ?

I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.

Thanks.

bqsr gatk4 • 865 views
ADD COMMENTlink written 16 months ago by oghzzang40
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2395 users visited in the last hour