Question: GATK4 BaseRecalibrator and Target region (whole exome data)
gravatar for oghzzang
9 months ago by
oghzzang30 wrote:

Dear Biostar users.

Hello I had pre-processing using GATK version.

My NGS data was made of exome captured (Whole exome data).

I have a question.

When I do baserecalibrator, shoud I use target intervals that is exome region ?

I checked GATK4 preprocessing. But I can't find comment about baserecalibrator and exome region.


bqsr gatk4 • 575 views
ADD COMMENTlink written 9 months ago by oghzzang30
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