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• What Constitutes Different Ensembl Db Releases And How Can We Map Them To Ncbi Genome Builds
  What are the differences between ensembl db releases for the same genome build? For example ense...
• Difference Between Ncbi Build 36.3 And Ncbi Build 37.1?
  What is difference between NCBI build 36.3 and NCBI build 37.1? Which build of NCBI is being used...
• Annovar for mouse buildver and downdb?
  Hi All I am trying to use annovar for mosue data. I used this command to create the mouseDB: ...
• Annovar and CADD Annotation
  I CADD scored my set of variants called on build 38 by using Annovar. Then I converted my coordin...
• Annovar Vs Syzygy
  Which is better to use? Annovar or Syzygy?? What is the difference between both ?
• Two Ensembl Transcript Ids seem swapped with respect to AA sequence in different genome builds
  I am trying to use Ensembl transcript ids to identify the amino acid sequences they encode. My ...
• start OMA run - file.log
  Hi, I have a question about the file.log when OMA start to convert the files. I download 30 ...
• ANNOVAR vs VEP
  I was comparing the results from ANNOVAR and VEP and what I found is that  gene-based vs transc...
• Phastcons 46-Way Alignments To Annotate Variants That Fall Within Conserved Genomic Regions
  Dear All, I am trying to annotate variants that fall within the conserved genomic regions with a...
• I wonder difference among the gene database
  I want to talk about the gene db, especially Refseq, Ensembl, UCSC I wonder what they have merit...
• Convert Gene location from one human genome build to another
  I have some genes list and I need to find the chromosome position of those genes. I found 2 web s...
• Discrepencies between ANNOVAR and Gencode annotations of 1000 genomes
  I have annotated 1000 genomes phase 3 data using Annovar, whilst also using the Gencode annotatio...
• Differences in exon number from Biopython Entrez Package and ANNOVAR
  Hi everybody, I have a strange problem, which for sure has something to do with the version of s...
• questions regarding Oncotator and Annovar
  Hi all. I am analyzing somatic mutations and I ran the two annotation programs (annovar and onco...