Entering edit mode
5.8 years ago
ash
▴
10
Hi everyone,
I am new to bioinformatics field. So please apologize for my questions that I am not unaware of. I wanted to use a tool called Clove https://github.com/PapenfussLab/clove to classify the breakpoint calls from the gridss software (https://github.com/PapenfussLab/gridss) as Structural variants.
But for using Clove I need to specify two values
- Mean coverage value.
- Variance of coverage value.
So is there a method or tool where I can calculate these values from my bam File. It would be really helpful if you can answer.