Coverage variance and mean coverage
Entering edit mode
3.3 years ago
ash ▴ 10

Hi everyone, I am new to bioinformatics field. So please apologize for my questions that I am not unaware of. I wanted to use a tool called Clove to classify the breakpoint calls from the gridss software ( as Structural variants. But for using Clove I need to specify two values 1. Mean coverage value. 2. Variance of coverage value.

So is there a method or tool where I can calculate these values from my bam File. It would be really helpful if you can answer.

sequence coverage Tool • 1.0k views

Login before adding your answer.

Traffic: 2925 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6