Coverage variance and mean coverage
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3.3 years ago
ash ▴ 10

Hi everyone, I am new to bioinformatics field. So please apologize for my questions that I am not unaware of. I wanted to use a tool called Clove https://github.com/PapenfussLab/clove to classify the breakpoint calls from the gridss software (https://github.com/PapenfussLab/gridss) as Structural variants. But for using Clove I need to specify two values 1. Mean coverage value. 2. Variance of coverage value.

So is there a method or tool where I can calculate these values from my bam File. It would be really helpful if you can answer.

sequence coverage Tool • 1.0k views
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