I couldn't find the answer for this elsewhere on the forum. I have run .bam files (between 8 bg and 15 gb each, uploaded via FTP client) analysis with Cufflinks, using a genome reference (not as guide), and with the multi-read correct option selected. My first few analysis worked well. I then loaded another batch of .bam files, and perfomed the same operation. However, in these cases I obtained a error message:
**Traceback (most recent call last): File "/jetstream/scratch0/main/jobs/19873177/tool_files/cufflinks_wrapper.py", line 9, in <module> from galaxy.datatypes.util.gff_util import parse_gff_attributes, gff_attributes_to_str File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/datatypes/util/gff_util.py", line 6, in <module> from bx.intervals.io import GenomicInterval, GenomicIntervalReader, MissingFieldError, NiceReaderWrapper, ParseError ImportError: No module named bx.intervals.io**
I have tried running the jobs again, but got the same error message. I don't see what can be wrong, especially since I couldn't find a difference between the first and second batch of files.
If you need more details regarding this, just let me know. Any help would be very appreciated!