Tool for grouping sequences into clusters with homology within each one above certain threshold?

Question

[prishly]

Is there a tool/script/algorithm for grouping sequences into bins so that within each group homology for any two sequences is above (or equal to) a certain threshold value (unless there's only one sequence in a bin)? Some sequences may end up being chimeric, some bins may end up containing a single sequence but only if they don't fit into all other bins.

Answer 1

[pbpanigrahi]

Try CD-HIT