Question: Genome assembly and annotation
0
gravatar for biodano.geo
17 months ago by
biodano.geo0 wrote:

Hi guys i'm run assembly i want know if you know some paper or guide that involve quality control, trimmim , assembly, statistic and annotation. Please help me.

assembly • 758 views
ADD COMMENTlink modified 17 months ago by lieven.sterck6.4k • written 17 months ago by biodano.geo0
0
gravatar for Philipp Bayer
17 months ago by
Philipp Bayer6.5k
Australia/Perth/UWA
Philipp Bayer6.5k wrote:

There are many 'best practises' papers by now, the exact paper depends on your species (bacterium? plant?) and your technology (2nd generation? 3rd generation? Hybrid? 10x?)

Ten steps to get started in Genome Assembly and Annotation https://f1000research.com/articles/7-148/v1

A beginner’s guide to eukaryotic genome annotation http://www.yandell-lab.org/publications/pdf/euk_genome_annotation_review.pdf

The BRAKER paper Supplementary Materials are also useful; https://academic.oup.com/bioinformatics/article/32/5/767/1744611

And if your interest lies in repetitive elements of the genome, look at The case for not masking away repetitive DNA from Keith Slotkin: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-018-0120-9

ADD COMMENTlink written 17 months ago by Philipp Bayer6.5k
0
gravatar for lieven.sterck
17 months ago by
lieven.sterck6.4k
VIB, Ghent, Belgium
lieven.sterck6.4k wrote:

here is another good starting point : Ten steps to get started in Genome Assembly and Annotation

ADD COMMENTlink written 17 months ago by lieven.sterck6.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1148 users visited in the last hour