I am converting LRG coding sequence co-ordinate to hg19 genomic.
In "NCBI Genome Remapping Service- clinical remap " gives two types of output (given in this image).
Output1. Download full mapping report
CHROM START END NC_000009.11 136131070 136131072 (basepairs=>CCT)
Output2.Download Annotation Data(vcf-format)
CHROM POS ID REF ALT NC_000009.11 136131068 . TGAG T
My question is why the co-ordinate and base pairs are different for the same input.