Question: Neoantigen prediction Tools
1
gravatar for anu014
7 months ago by
anu014160
India
anu014160 wrote:

Hello everyone!

Can anyone suggest me some tools for neoantigen prediction in Whole exome sequencing data?

snp alignment next-gen • 426 views
ADD COMMENTlink modified 26 days ago • written 7 months ago by anu014160

Thanks a lot all! I'll try them and get back to you :)

ADD REPLYlink written 26 days ago by anu014160
2
gravatar for Kevin Blighe
7 months ago by
Kevin Blighe35k
Republic of Ireland
Kevin Blighe35k wrote:

Please refer to the Supplementary Methods of the work by a colleague of mine (from Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade)

Kevin

ADD COMMENTlink written 7 months ago by Kevin Blighe35k
2
gravatar for Chris Miller
6 months ago by
Chris Miller20k
Washington University in St. Louis, MO
Chris Miller20k wrote:

I've helped to develop pVACtools along with some very talented people from the Griffith lab here at WUSTL. It works well

Vaxrank is another, from the Hammerbacher lab

ADD COMMENTlink modified 6 months ago • written 6 months ago by Chris Miller20k
2
gravatar for fotakisg
8 weeks ago by
fotakisg20
fotakisg20 wrote:

Hello,

You should also check pVACseq (from pVACtools, as mentioned above), MuPeXI and neoepiscope.

ADD COMMENTlink written 8 weeks ago by fotakisg20
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