Error during mapping using bwa mem
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5.8 years ago
Begali • 0

Hi , any suggestion to fix this error during using bwa mem by this command:

bwa mem hg38.fasta  Z#1.fq > Z#1.sam

Got error

[bwt_restore_bwt] Failed to allocate 3217346964 bytes at bwt.c line 452: Cannot allocate memory

how to fix it, I have already tried to update bwa but still same error

software error alignment • 2.0k views
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How much memory do you have available? The error is clear. bwa is not able to allocate enough memory.

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Are your files really called Z#1.fq and Z#2.fq? After the first #, the shell will stop interpreting the rest of the command line.

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