Hello all,
Apologies in advance if this sort of post isn't appropriate for these forums. I'm a student with a background in comp sci, but over the summer I'm helping a local lab analyze some data they've collected on the microbiome. I have a database of amino acids in a control and a database of amino acids of those same amino acids when a variable is changed. I also have the fold change calculated and a list of chemicals that are significantly up-regulated and down-regulated (but not their precise p-values). I was wondering if anyone has any suggestions as to how I should go about inputting such data into IPA (Ingenuity's Pathway Analysis). Is this information alone enough for IPA or are there other values I should try to calculate? Thanks a bunch, and please let me know if any further information would be helpful!
IPA is commercial software, didn't you pay for support?