How to set the names of two output files (corresponding to each mate) in
randomreads.sh script of BBMap package?
Help page specifies the
out=filename option but when doing like that I get only I file containing both mates. Omitting that option produced two files but with random names.
Here is the command I use:
randomreads.sh ref=C_glabrata_CBS138_current_chromosomes.fasta out=reads.fastq length=75 reads=100 coverage=1 replacenoref=t simplenames=t seed=-1 paired=t metagenome=t
P.S. How can I tag Brian Bushnell ?