Entering edit mode
5.7 years ago
healing80
•
0
Hello. I am a newbie in bioinfomatics. I have downloaded bowtie 2 and type 'make' to install. The computer gave me messages below.
Is bowtie2 installed properly? and what is fatal errors?
-------
1 error generated.
In file included from bowtie_build_main.cpp:25:
In file included from ./ds.h:30:
./threading.h:29:11: fatal error: 'tbb/mutex.h' file not found
include <tbb/mutex.h>
^~~~~~~~~~~~~
1 error generated.
make: [bowtie2-build-s] Error 1
Also, I tried installing tophat 2, but 'make' does not work. it gave me this message.
$ ln -s ~/tophat-2.1.1.Linux_x86_64/tophat2
ln: ./tophat2: File exists
kimh2@XXXXX ~/desktop
$ cd tophat-2.1.1.Linux_x86_64
kimh2@XXXXX ~/bin
$ ./configure --prefix=/path/to/tophat_base_dir --with-boost=/path/to/boost_prefix_dir
-bash: ./configure: No such file or directory
Anybody gives me some advice? I am learning ABC for bioinformatics, so please give me advice to follow easily.
Thank you.
Or use a package manager like anaconda.
Thanks a lot. it is really helpful.