Question: visualization of chromatin interaction networks
0
gravatar for Bogdan
16 months ago by
Bogdan890
Palo Alto, CA, USA
Bogdan890 wrote:

Dear all,

please would you advise if there is any bioinformatics tool (in R/Bioc, or in any other environment eg Cytoscape) that could help with the visualization of CHROMATIN INTERACTION NETWORKS as a GRAPH (where NODES="chromosome loci", and EDGES = "interactions"). Thanks a lot !

-- bogdan

ADD COMMENTlink modified 13 months ago by zx87548.4k • written 16 months ago by Bogdan890
0
gravatar for EagleEye
16 months ago by
EagleEye6.5k
Sweden
EagleEye6.5k wrote:
  • Circos is best to visualize chromosome and its interaction (Intra- and Inter-chromosomal).
  • If you are talking about HiC data try this, HiCplotter
ADD COMMENTlink modified 16 months ago • written 16 months ago by EagleEye6.5k
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