Question: visualization of chromatin interaction networks
0
gravatar for Bogdan
8 months ago by
Bogdan720
Palo Alto, CA, USA
Bogdan720 wrote:

Dear all,

please would you advise if there is any bioinformatics tool (in R/Bioc, or in any other environment eg Cytoscape) that could help with the visualization of CHROMATIN INTERACTION NETWORKS as a GRAPH (where NODES="chromosome loci", and EDGES = "interactions"). Thanks a lot !

-- bogdan

ADD COMMENTlink modified 5 months ago by zx87546.8k • written 8 months ago by Bogdan720
0
gravatar for EagleEye
8 months ago by
EagleEye6.2k
Sweden
EagleEye6.2k wrote:
  • Circos is best to visualize chromosome and its interaction (Intra- and Inter-chromosomal).
  • If you are talking about HiC data try this, HiCplotter
ADD COMMENTlink modified 8 months ago • written 8 months ago by EagleEye6.2k
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