visualization of chromatin interaction networks
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3.3 years ago
Bogdan ★ 1.1k

Dear all,

please would you advise if there is any bioinformatics tool (in R/Bioc, or in any other environment eg Cytoscape) that could help with the visualization of CHROMATIN INTERACTION NETWORKS as a GRAPH (where NODES="chromosome loci", and EDGES = "interactions"). Thanks a lot !

-- bogdan

networks chromosome interactions R • 810 views
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Entering edit mode
3.3 years ago
EagleEye 7.1k
  • Circos is best to visualize chromosome and its interaction (Intra- and Inter-chromosomal).
  • If you are talking about HiC data try this, HiCplotter
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