visualization of chromatin interaction networks

Question

[Bogdan]

Dear all,

please would you advise if there is any bioinformatics tool (in R/Bioc, or in any other environment eg Cytoscape) that could help with the visualization of CHROMATIN INTERACTION NETWORKS as a GRAPH (where NODES="chromosome loci", and EDGES = "interactions"). Thanks a lot !

-- bogdan

Answer 1

[EagleEye]

• Circos is best to visualize chromosome and its interaction (Intra- and Inter-chromosomal).
• If you are talking about HiC data try this, HiCplotter