Question: How to download dataset from MITOMAP?
0
gravatar for MatthewP
11 months ago by
MatthewP120
China
MatthewP120 wrote:

Hello all! I want to download dataset offered by MITOMAP. Here's what I want to download:

mtDNA Variants (includes mini insertions & deletions)

mtDNA Mutations with Reports of Disease-Associations

I don't know how to download those database(I want to add these information for my VCF annotation file.). I view the source code of web page and copy information in the table like:

["12276","<a href='/MITOMAP/GenomeLoci#MTTL2'>MT-TL2</a>","<a href='/MITOMAP/DiseaseList#CPEO'>CPEO</a>","G12276A","tRNA Leu (CUN)","-","+","Cfrm","MITOMAP<br><span style='display:inline-block;white-space:nowrap;'><a href='/cgi-bin/mitotip?pos=12276&alt=A&quart=0'><u>Pathogenic</u></a> <i class='fa fa-arrow-up' style='color:red' aria-hidden='true'></i><i class='fa fa-arrow-up' style='color:red' aria-hidden='true'></i><i class='fa fa-arrow-up' style='color:red' aria-hidden='true'></i></span>","<a href='/cgi-bin/index_mitomap.cgi?title=RNA+Mutation+A+at+12276&pos=12276&ref=G&alt=A'>1</a>","<a href='/cgi-bin/print_ref_list?refs=8563,90835,90836&title=RNA+Mutation+G12276A' target='_blank'>3</a>"]

Then I write python script use regular expression to get information I want.

I know this could work, but also it's a very bad way. Is anybody has downloaded dataset from MITOMAP before? Or anyone can offer me better solutions´╝č Thanks!

mitomap database mtdna • 462 views
ADD COMMENTlink written 11 months ago by MatthewP120
2

Hi, is your dataset here ? Mitomap Resources Alternatively, I would just email the authors, they have been very helpful to us in the past to share their public datasets.

ADD REPLYlink written 11 months ago by Nandini810

Thanks, that's exactly what I want.

ADD REPLYlink written 11 months ago by MatthewP120
1

You could use the print view button on that page and then save the page to scrape the information off later on. It does appear that there is no easy way to download that data linked.

ADD REPLYlink written 11 months ago by genomax68k

Ok, that's what I am doing, thanks for you reply!

ADD REPLYlink written 11 months ago by MatthewP120
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