Hello all! I want to download dataset offered by MITOMAP. Here's what I want to download:
mtDNA Variants (includes mini insertions & deletions)
mtDNA Mutations with Reports of Disease-Associations
I don't know how to download those database(I want to add these information for my VCF annotation file.). I view the source code of web page and copy information in the table like:
["12276","<a href='/MITOMAP/GenomeLoci#MTTL2'>MT-TL2</a>","<a href='/MITOMAP/DiseaseList#CPEO'>CPEO</a>","G12276A","tRNA Leu (CUN)","-","+","Cfrm","MITOMAP<br><span style='display:inline-block;white-space:nowrap;'><a href='/cgi-bin/mitotip?pos=12276&alt=A&quart=0'><u>Pathogenic</u></a> <i class='fa fa-arrow-up' style='color:red' aria-hidden='true'></i><i class='fa fa-arrow-up' style='color:red' aria-hidden='true'></i><i class='fa fa-arrow-up' style='color:red' aria-hidden='true'></i></span>","<a href='/cgi-bin/index_mitomap.cgi?title=RNA+Mutation+A+at+12276&pos=12276&ref=G&alt=A'>1</a>","<a href='/cgi-bin/print_ref_list?refs=8563,90835,90836&title=RNA+Mutation+G12276A' target='_blank'>3</a>"]
Then I write python script use regular expression to get information I want.
I know this could work, but also it's a very bad way. Is anybody has downloaded dataset from MITOMAP before? Or anyone can offer me better solutions？ Thanks!