I have a huge list of uniprot proteins and need to get expression for all of them as matrix of genes and samples
How can I get it from GEO or human protein atlas or any other resources
I am new in that, Any one could help ?
Thanks in advance
There are too many 'unknowns', from our perspective, in relation to your question - that's why nobody has yet responded.
You have a list of proteins. You want to get the gene expression of the genes relating to these proteins. In which tissues are you interested?; in which diseases are you interested?; have you considered that issue that gene and protein names can be entirely different?
A useful resource to look up the expression of genes in different tissues is: Genotype-Tissue Expression (GTEx). You can download data from GTEx via the Datasets tab
Apart from that, there are tens of thousands of GEO datasets, so, you an start searching Here to find out which datasets would be of most interest to you.