PICRUSt mapping file
1
0
Entering edit mode
3.5 years ago
eroljb • 0

I am working with PICRUSt and I need a file mapping GreenGenes 13.8 OTUs (97% clustering) to IMG IDs. I know that PICRUSt provides a file in its tutorial, but this does not seem to be the correct version. Is there a way to find or generate these mapping files?

PICRUSt metagenomics picrust • 1.4k views
ADD COMMENT
0
Entering edit mode

From all the steps mentioned here at this link, which step are you referring to ? Can you please elaborate?

ADD REPLY
0
Entering edit mode

I am actually working on genome prediction (described in the previous tutorial).

ADD REPLY
0
Entering edit mode
3.5 years ago
eroljb • 0

I know I am answering my own question, but this may be helpful for others. PICRUSt provides a set of precomputed files at https://picrust.github.io/picrust/picrust_precalculated_files.html. The KO file on this page is indexed by GreenGenes IDs, so it does not seem that any mapping is needed.

ADD COMMENT

Login before adding your answer.

Traffic: 2620 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6