Entering edit mode
5.8 years ago
rob.costa1234
▴
310
The h5 file generated - (filtered_gene_bc_matrices_h5 ) by cell ranger pipeline is a normalized data or it is still a raw data?
Any suggestion
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/advanced/h5_matrices says non-zero UMI counts, doesn't mention normalization at all.
Yes, my suggestion is to add more detail and elaborate on your question.