I used bcftools fixref plugin to match reference allele with GRCh37. As the result shown below, I have got 18901 unresolved SNPs.
- Is there anyway to see the rsID of these unresolved SNPs?
- Why are there unresolved SNPs?
- What can I do to make these SNPs's reference allele match those in GRCh37?
Result of bcftools fixref
Thank you for any feedback.
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