Question: Convert ATGC in PLINK to illumina AB
0
gravatar for kiya89
4 weeks ago by
kiya890
kiya890 wrote:

Hello.

I have PLINK data file (ATGC). But I want use illumina AB format.

How can I converting PLINK ATGC data format into illumina AB?

snp • 98 views
ADD COMMENTlink written 4 weeks ago by kiya890

What have you tried?

ADD REPLYlink written 4 weeks ago by Ram17k

To change format, i tried using program like gengen etc. But, i couldn't get the result by error. Other try is that using PLINK --recode12 option. But, I don't know if the result is the same illumina AB.

ADD REPLYlink written 4 weeks ago by kiya890

--recode12 is no the same. The Illumina AB format is quite specific, often called TOP / BOT format.

What commands have you tried with GenGen and what was the error(s)?

ADD REPLYlink written 4 weeks ago by Kevin Blighe26k
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