Question: TF binding site in the Mitochondrial DNA
gravatar for salvatore.raieli2
7 months ago by
salvatore.raieli240 wrote:

Hi everyone,

I used TFBStools and I retrieved the sequence and frequence matrix for a TF.

for example:


opts <- list()
opts[["species"]] <- 9606
opts[["name"]] <- "RUNX1"
opts[["type"]] <- "SELEX"
opts[["all_versions"]] <- TRUE
PFMatrixList <- getMatrixSet(JASPAR2014, opts)

I would like to know using this TF matrix if the TF has some binding sites in the promoters of human mitochondrial genes (which promotor, which genes) How I can do?

Thank you very much for your help

tf tfbs • 221 views
ADD COMMENTlink modified 7 months ago by Biostar ♦♦ 20 • written 7 months ago by salvatore.raieli240
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1265 users visited in the last hour