Question: TF binding site in the Mitochondrial DNA
0
gravatar for salvatore.raieli2
5 months ago by
salvatore.raieli240 wrote:

Hi everyone,

I used TFBStools and I retrieved the sequence and frequence matrix for a TF.

for example:

library(JASPAR2014)
library(TFBSTools)

opts <- list()
opts[["species"]] <- 9606
opts[["name"]] <- "RUNX1"
opts[["type"]] <- "SELEX"
opts[["all_versions"]] <- TRUE
PFMatrixList <- getMatrixSet(JASPAR2014, opts)
PFMatrixList

I would like to know using this TF matrix if the TF has some binding sites in the promoters of human mitochondrial genes (which promotor, which genes) How I can do?

Thank you very much for your help

tf tfbs • 173 views
ADD COMMENTlink modified 4 months ago by Biostar ♦♦ 20 • written 5 months ago by salvatore.raieli240
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