Question: RepeatScout - Could not allocate space for sequence
gravatar for niklasjoshua.ebner
2.5 years ago by
Switzerland/Basel/Department of Environmental Sciences
niklasjoshua.ebner0 wrote:

When trying to compile a repeat library using RepeatScout via:

build_lmer_table -sequence data/genome.fa -freq masking/genome.freq

I get the following ERROR message:

"Could not allocate space for sequence"

Any suggestions on how to solve this issue?

Thanks :)

FYI: I am using UBUNTU 16.04 in Parallels on macOS 10.13.6 and installed RepeatScout and RepeatMasker via conda install repeatmasker etc.

ADD COMMENTlink modified 2.5 years ago by GenoMax95k • written 2.5 years ago by niklasjoshua.ebner0

what is the output of (inside the virtual machine):

df -h /


df -h /home
ADD REPLYlink written 2.5 years ago by h.mon32k
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