Question: RepeatScout - Could not allocate space for sequence
0
gravatar for niklasjoshua.ebner
2.5 years ago by
Switzerland/Basel/Department of Environmental Sciences
niklasjoshua.ebner0 wrote:

When trying to compile a repeat library using RepeatScout via:

build_lmer_table -sequence data/genome.fa -freq masking/genome.freq

I get the following ERROR message:

"Could not allocate space for sequence"

Any suggestions on how to solve this issue?

Thanks :)

FYI: I am using UBUNTU 16.04 in Parallels on macOS 10.13.6 and installed RepeatScout and RepeatMasker via conda install repeatmasker etc.

ADD COMMENTlink modified 2.5 years ago by GenoMax95k • written 2.5 years ago by niklasjoshua.ebner0

what is the output of (inside the virtual machine):

df -h /

And:

df -h /home
ADD REPLYlink written 2.5 years ago by h.mon32k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2162 users visited in the last hour
_