Biopython restriction sites
0
0
Entering edit mode
5.8 years ago
neilgupte7 • 0

i want to access the site at which each restriction enzymes work and show the result in one file .Is there any way we can use the Bio.Restriction.Restriction module to list the sites for AllEnzymes class present . Basically i want ex Restriction.EcoRI.site

to be applied to AllEnymes

plz help

Biopython Restriction eznymes • 1.6k views
ADD COMMENT
0
Entering edit mode

There is no need to SHOUT. I have adapted your title to remove the capital letters. I have also adapted it to make it more specific. Please keep this in mind for further posts.

ADD REPLY
0
Entering edit mode

okay ,was my first post here ,will be careful from next time thanks for the reply

ADD REPLY
0
Entering edit mode
ADD REPLY
0
Entering edit mode

will have a look thank you

ADD REPLY
0
Entering edit mode

What is the actual output data you want? genomic coordinates? Restriction counts? A list of all cutting enzymes?

ADD REPLY
0
Entering edit mode

the following function provides EcoRI.elucidate() 'G^AATT_C'

I want the this output for all the enzymes inside my restriction batch wanted to know the way of using this function by iterating it inside my restriction batch.cause i have some 300 enzymes to work with cant include every single one of them ,will take very long time

ADD REPLY

Login before adding your answer.

Traffic: 2498 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6