How to generate the map file for selscan?
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3.0 years ago
Victor ▴ 10

Hello

I have 2 datasets and want to analysis the XPEHH scores by selscan.

I used plink and beagle to pre-process my datasets.

When I try to run the selscan. my datasets have same haplotypes but not the same loci in my map file? I dont understand why my map file can not work in selscan. Do you have any ideals for this?

How to generate the map file for selscan?

Vic

phase beagle plink selscan • 1.0k views
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