Downloading Genome Assembly and Annotation report from NCBI

Question

[saadleeshehreen]

Hi, I want to download the Genome Assembly and Annotation report for all bacterial species at a time. It's not practical to download one by one. How can I do that?

Thanks

Answer 1

[GenoMax]

This file should have the reports for prokaryotic genomes.

README file says it contains the following information.

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prokaryotes.txt:
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Organism/Name          Organism name usually at the species level 
BioProject             BioProject Accession number (from BioProject database)
Group                  Phylum 
SubGroup               Class level 
Size (Mb)              Total length of DNA submitted for the project
GC%                    Percent of nitrogenous bases (guanine or cytosine) in 
                       DNA submitted for the project 
Chromosomes/RefSeq     Refseq chromosome sequence accessions 
Chromosomes/INSDC      GenBank chromosome sequence accessions 
Plasmids/RefSeq        Refseq plasmid sequence accessions
Plasmids/INSDC         GenBank plasmid sequence accessions   
WGS                    Four-letter Accession prefix followed by version as                  
                       defined in WGS division of GenBank/INSDC
Scaffolds              Number of scaffolds in the assembly
Genes                  Number of Genes annotated in the assembly
Proteins               Number of Proteins annotated in the assembly  

Release Date           First public sequence release for the project
Modify Date            Sequence modification date for the project
Status                 Highest level of assembly: 
                               Chromosomes  chromosome is represented by gapless contig
                               Scaffolds or contigs  sequence assembled but no chromosomes
                               SRA or Traces  raw sequence data available 
                               No data  no data is connected to the BioProject ID

[saadleeshehreen]

Thanks a lot...:) I am looking for this one