Hi all, I have just performed imputation on a chromosome X dataset, using the Michigan Imputation server, and I am a bit confused about the output statistics.
Here are the output statistics at pastebin : https://pastebin.com/S9QG7eX1
Am I right in thinking that here, "Match" indicates the number of SNPs that match on the reference genome? If so, then I am wondering why is it that the remaining sites to be imputed have somewhat doubled from 34,455 SNPs to 66,049?
Thanks very much!