Question: SSR`s identification and primer designing
0
gravatar for moohit21
14 months ago by
moohit210
moohit210 wrote:

i am using GMATA software for SSR`s identification and primer designing, i install the programme as per direction given in the manual but while running the software i an getting error. The software works in both ways command line and user interfacae.

cmmnd :

perl gmata.pl  -r 5 -m 2 -x 6 -s 0 -i  /home/crpgws1/GMATA/FINAL_BPdraftgenome_916_Single_line.fa

Error:

ERROR:
Running statement: 
 -r 5 -m 2 -x 6 -s 0 -i /home/crpgws1/GMATA/FINAL_BPdraftgenome_916_Single_line.fa

File path:
/home/crpgws1
Unable to excute SHELL command
gmata primer ssr • 310 views
ADD COMMENTlink modified 14 months ago by finswimmer12k • written 14 months ago by moohit210

Hello moohit21,

this seems to be just the error message. Please also provide the complete command you use.

fin swimmer

ADD REPLYlink written 14 months ago by finswimmer12k

Sir i have edited the commands in my question, pls do check

ADD REPLYlink written 14 months ago by moohit210

Is perl running properly? Try running perl --version

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.
code_formatting

fin swimmer

ADD REPLYlink written 14 months ago by finswimmer12k

Thank you. yes my perl is running properly.

ADD REPLYlink written 14 months ago by moohit210

What is your operating system? Linux? Which distro and version?

ADD REPLYlink written 14 months ago by h.mon27k

My operating system is Ubuntu 16.04 LTS

ADD REPLYlink written 14 months ago by moohit210

Are you copy / pasting the exact error message? Is seems there is a break inside the file name path:

File path:

/home/crpgws1

Whereas it should be:

/home/crpgws1/GMATA/FINAL_BPdraftgenome_916_Single_line.fa

ADD REPLYlink modified 14 months ago • written 14 months ago by h.mon27k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1604 users visited in the last hour