I have a RNA-seq data with 3 different groups treated with different diets. I already made the heatmap with the log2 values from the comparison between the groups.
Now I want to make another heatmap containig not the comparison between the groups but the normalized expression values (in this case I will have a heatmap of my 3 groups).
I have the data from DESeq2 but I don't know if I can use it directly in the heatmap or I need to do some additional normalization before that.
Thank you very much