Entering edit mode
5.7 years ago
Sonya
•
0
Hi all,
I have a question about understanding the two filter types from the Michigan imputation server output. The header of output illustrates the two types as
##FILTER=<ID=GENOTYPED,Description="Marker was genotyped AND imputed">
##FILTER=<ID=GENOTYPED_ONLY,Description="Marker was genotyped but NOT imputed">
I'm confused about how the server classifies which SNP to be genotyped and which to be genotyped_only?
Thank you very much!