Hi I have snps from rnaseq data. I split multisample file into single sample files. Now each sample vcf, I want to convert vcf to maf in vcf2maf . I am getting following error
perl /usr/local/bin/vcf2maf.pl --input-vcf F545_altref_vep.vcf --output-maf F545_altref_vep.maf --tumor-id WD1309 --ref-fasta Homo_sapiens.GRCh38.dna.toplevel.fa.gz >ERROR: Your VCF uses CR line breaks, which we can't support. Please use LF or CRLF.
I will appreciate all the suggestions
Thank you Archana