Hi all, I am stuck with this error.
Error in `$<-.data.frame`(`*tmp*`, "Kingdom", value = character(0)) : replacement has 0 rows, data has 2407
This is what I get after running this command
amp_rabund(data = physeqP, tax.aggregate = "Genus", tax.add = "Phylum", scale.seq = 100)
This is how my phyloseq object (data) looks like
> physeqP phyloseq-class experiment-level object otu_table() OTU Table: [ 2407 taxa and 73 samples ] sample_data() Sample Data: [ 73 samples by 3 sample variables ] tax_table() Taxonomy Table: [ 2407 taxa by 6 taxonomic ranks ]
I have tried to do it on data subset as well but it fails every time. I am not even able to understand what problem it is. The instructions i am following are given in this link
I would be very thankful if you please help me fix the issue... Thanks in advance Arslan