Question: Mauve export similarity
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gravatar for rmf
20 months ago by
rmf920
rmf920 wrote:

I am using Mauve multiple genome alignment tool v20150226 to align two fasta files. The GUI displays a line graph.

enter image description here

I think the line graph denotes a measure of similarity of that region in one sequence to the other. Is there some way to export this similarity measure as a text file? I would like to modify it and import that into IGV as a bedGraph.

ADD COMMENTlink modified 18 months ago by Biostar ♦♦ 20 • written 20 months ago by rmf920

Mauve should have given you an XMFA file of the alignment I think?

ADD REPLYlink written 20 months ago by Joe16k
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