Question: Supervised ML opinion mining of medical entities: tools?
gravatar for vepiette
3 months ago by
vepiette0 wrote:


I would like to extract relations between the entities of 'quality of life' and 'health interventions' out of a corpus of medical texts via supervised machine learning.

I wonder whether there is a tool that already was developed to uncover these entities in Python or Java? For example, like GENIA does for proteins. I failed to find such a tool.

Thank you in advance for your help!

ADD COMMENTlink modified 8 weeks ago by RamRS19k • written 3 months ago by vepiette0
gravatar for Kevin Blighe
8 weeks ago by
Kevin Blighe32k
Republic of Ireland
Kevin Blighe32k wrote:

You should research the area of Natural Language Processing (NLP). As an example, colleagues in Boston, USA, are building predictive models from doctors' notes, with patient diagnoses as the endpoints. The inputs to these models are just key terms that are extracted from the notes. Other things are also obviously going into these models.

You are likely heavily restricting yourself with just Python and JAVA, in this case, as SAS, STATA, and R are 'better' statistical languages to use for what you want to do.

Also keep in mind that Machine Learning is, like, a big flop, as most other terms that come and go in bioinformatics and biostatistics. People in favour of these will cite isolated examples of success, though (somewhat like network analysis). From my practical experiences and those of others, standard regression models can build better predictors.


ADD COMMENTlink written 8 weeks ago by Kevin Blighe32k
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