How do you convert single end sam file to fastq?
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5.6 years ago
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I have (+/-)strand specific sam files that have been mapped to the reference. I want to convert them to fastq. How can I convert them?

samtfastq sam fastq • 7.1k views
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5.6 years ago

http://www.htslib.org/doc/samtools.html

samtools fastq in.query_sorted.bam
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